This function can use the API of the European Nucleotide Archive
(recommended) or the Sequence Read Archive.
Usage
fetchMetadata(
bioproject,
host = c("ena", "sra"),
fields = c("study_accession", "sample_accession", "secondary_sample_accession",
"sample_alias", "sample_title", "experiment_accession", "run_accession", "fastq_md5",
"fastq_ftp", "fastq_aspera"),
file = NULL
)
Arguments
- bioproject
String indicating bioproject accession.
- host
String indicating from where to fetch the metadata.
- fields
Character vector indicating which fields to fetch, if host
is "ena".
- file
String indicating output file path, if not NULL.