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seeker 1.0.9
- Revised “Description” text.
- Skipped more tests on CRAN to avoid installation of packages.
seeker 1.0.8
- Removed default install directories for dependencies in
installSysDeps()
.
- Replaced
options(warn=-1)
to use suppressWarnings()
.
- Updated description text.
- Revised console printing.
seeker 1.0.7
- Added support for more platforms.
- Added ability for
seekerArray()
to skip processing the expression data.
seeker 1.0.6
- Added installation of snakemake by
installSysDeps()
for easier reproducible analyses.
seeker 1.0.5
- Added argument to
installSysDeps()
to specify directory in which to create or modify .Rprofile.
seeker 1.0.4
- Skipped “
getNaiveEsetAe()
supported” test on CRAN due to BioConductor issues.
seeker 1.0.3
- Made
getProbeGeneMapping()
test check for version number of mapping package.
- Revised arguments for
seekerArray()
and updated tests and vignettes accordingly.
seeker 1.0.2
- Set default parent directory for
seekerArray()
.
- Added custom CDF support for platform GPL17400.
seeker 1.0.1
- Updated
seeker()
to save unmodified metadata file.
seeker 1.0.0
- Updated
seeker()
to output info of SRA Toolkit-based dependencies.
- Revised tests and updated version number to prepare for a CRAN submission.
seeker 0.0.0.9068
- Updated
run_seeker.sh
to use correct conda environment.
- Updated Reproducibility vignette to not require local installation of the R package.
seeker 0.0.0.9067
- Changed
species
to organism
for consistency with NCBI and other packages.
- Added checking for parallel backend.
seeker 0.0.0.9062
- Fixed syntax to adhere to lab code style.